Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS29Q9UBQ0 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AC135586.1-201ENST00000539323 574 ntBASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AL158212.4-201ENST00000624062 1286 ntBASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AC022144.1-201ENST00000602255 1580 ntBASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AC007292.2-201ENST00000593524 1812 ntBASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AL390755.1-201ENST00000623716 2027 ntBASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS29Q9UBQ0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS29Q9UBQ0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms