Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 SPDYE22P-201ENST00000582158 798 ntBASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCSER1Q9C0I3 FAM45BP-202ENST00000592932 1624 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC106881.1-201ENST00000605849 3329 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 MYCLP2-201ENST00000449268 967 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 ELK1P1-201ENST00000485699 580 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 CICP14-201ENST00000629111 2732 ntBASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CCSER1Q9C0I3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 AL139094.1-201ENST00000405549 1188 ntBASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 PIN1P1-201ENST00000412108 996 ntBASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.13■□□□□ 0.33
CCSER1Q9C0I3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms