Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHMP4CQ96CF2 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 SLED1-202ENST00000512051 380 ntBASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC104596.2-201ENST00000512793 793 ntBASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CHMP4CQ96CF2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 AL512384.1-201ENST00000406683 331 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 FAM86LP-201ENST00000478302 853 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 GIMAP3P-201ENST00000495150 836 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 HILS1-202ENST00000545329 423 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 AL161772.1-201ENST00000610494 4412 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 AC148477.4-201ENST00000613430 1793 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CU639417.3-201ENST00000624240 1404 ntBASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHMP4CQ96CF2 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CHMP4CQ96CF2 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms