Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.51■□□□□ 0.39
ERCC4Q92889 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 AC112482.1-201ENST00000492080 688 ntBASIC17.51■□□□□ 0.39
ERCC4Q92889 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.51■□□□□ 0.39
ERCC4Q92889 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.51■□□□□ 0.39
ERCC4Q92889 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.51■□□□□ 0.39
ERCC4Q92889 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.5■□□□□ 0.39
ERCC4Q92889 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
ERCC4Q92889 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
ERCC4Q92889 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.5■□□□□ 0.39
ERCC4Q92889 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
ERCC4Q92889 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 AC018529.2-202ENST00000611482 3087 ntBASIC17.5■□□□□ 0.39
ERCC4Q92889 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
ERCC4Q92889 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
ERCC4Q92889 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.5■□□□□ 0.39
ERCC4Q92889 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.5■□□□□ 0.39
ERCC4Q92889 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
ERCC4Q92889 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ERCC4Q92889 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
ERCC4Q92889 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.49■□□□□ 0.39
ERCC4Q92889 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.49■□□□□ 0.39
ERCC4Q92889 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AF228730.6-201ENST00000641497 218 ntBASIC17.49■□□□□ 0.39
ERCC4Q92889 AC084121.3-201ENST00000641716 218 ntBASIC17.49■□□□□ 0.39
ERCC4Q92889 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 KRT8P12-202ENST00000472924 1397 ntBASIC17.49■□□□□ 0.39
ERCC4Q92889 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
ERCC4Q92889 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ERCC4Q92889 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
ERCC4Q92889 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms