Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.56■□□□□ 0.56
VPS53Q5VIR6 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 WFDC1-204ENST00000613603 549 ntBASIC18.56■□□□□ 0.56
VPS53Q5VIR6 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS53Q5VIR6 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AL359258.3-201ENST00000622910 2331 ntBASIC18.55■□□□□ 0.56
VPS53Q5VIR6 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AL359711.2-201ENST00000563105 872 ntBASIC18.55■□□□□ 0.56
VPS53Q5VIR6 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 TMEM261P1-201ENST00000604899 340 ntBASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS53Q5VIR6 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS53Q5VIR6 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms