Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 REXO1L1P-202ENST00000608646 1974 ntBASIC16.5■□□□□ 0.23
VCPP55072 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 AC004987.2-201ENST00000395959 1148 ntBASIC16.5■□□□□ 0.23
VCPP55072 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.5■□□□□ 0.23
VCPP55072 AC006033.1-201ENST00000440505 426 ntBASIC16.5■□□□□ 0.23
VCPP55072 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.5■□□□□ 0.23
VCPP55072 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.5■□□□□ 0.23
VCPP55072 TDH-203ENST00000531764 1110 ntBASIC16.5■□□□□ 0.23
VCPP55072 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.5■□□□□ 0.23
VCPP55072 RARRES2P5-201ENST00000564013 466 ntBASIC16.5■□□□□ 0.23
VCPP55072 AC091271.1-201ENST00000611877 1162 ntBASIC16.5■□□□□ 0.23
VCPP55072 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 KRT8P37-201ENST00000451609 1420 ntBASIC16.5■□□□□ 0.23
VCPP55072 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.49■□□□□ 0.23
VCPP55072 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.49■□□□□ 0.23
VCPP55072 MPRIPP1-201ENST00000452433 1089 ntBASIC16.49■□□□□ 0.23
VCPP55072 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.49■□□□□ 0.23
VCPP55072 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.49■□□□□ 0.23
VCPP55072 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 MIR4313-201ENST00000580760 101 ntBASIC16.49■□□□□ 0.23
VCPP55072 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 U62317.3-201ENST00000608319 855 ntBASIC16.49■□□□□ 0.23
VCPP55072 AC007326.2-201ENST00000624224 7579 ntBASIC16.49■□□□□ 0.23
VCPP55072 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCPP55072 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.49■□□□□ 0.23
VCPP55072 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.49■□□□□ 0.23
VCPP55072 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VCPP55072 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VCPP55072 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
VCPP55072 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VCPP55072 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.48■□□□□ 0.23
VCPP55072 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VCPP55072 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.48■□□□□ 0.23
VCPP55072 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 KRT8P22-201ENST00000562317 1415 ntBASIC16.48■□□□□ 0.23
VCPP55072 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.48■□□□□ 0.23
VCPP55072 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCPP55072 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
VCPP55072 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms