Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 FAM90A2P-201ENST00000511144 1395 ntBASIC17.69■□□□□ 0.42
CTCFP49711 FAM90A25P-201ENST00000528404 1395 ntBASIC17.69■□□□□ 0.42
CTCFP49711 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.69■□□□□ 0.42
CTCFP49711 LRRC59-203ENST00000576448 1531 ntBASIC17.69■□□□□ 0.42
CTCFP49711 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.69■□□□□ 0.42
CTCFP49711 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CTCFP49711 LYPLA2P1-203ENST00000447689 696 ntBASIC17.69■□□□□ 0.42
CTCFP49711 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.69■□□□□ 0.42
CTCFP49711 RN7SL258P-201ENST00000478664 300 ntBASIC17.69■□□□□ 0.42
CTCFP49711 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC17.69■□□□□ 0.42
CTCFP49711 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.69■□□□□ 0.42
CTCFP49711 AL160314.3-201ENST00000556041 767 ntBASIC17.69■□□□□ 0.42
CTCFP49711 MIR5196-201ENST00000578146 115 ntBASIC17.69■□□□□ 0.42
CTCFP49711 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.69■□□□□ 0.42
CTCFP49711 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC17.69■□□□□ 0.42
CTCFP49711 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.69■□□□□ 0.42
CTCFP49711 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CTCFP49711 AC005632.3-201ENST00000605544 308 ntBASIC17.69■□□□□ 0.42
CTCFP49711 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CTCFP49711 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 AC073592.2-201ENST00000623062 780 ntBASIC17.69■□□□□ 0.42
CTCFP49711 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTCFP49711 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.68■□□□□ 0.42
CTCFP49711 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.68■□□□□ 0.42
CTCFP49711 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CTCFP49711 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.68■□□□□ 0.42
CTCFP49711 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.68■□□□□ 0.42
CTCFP49711 RPL18AP3-201ENST00000462885 528 ntBASIC17.68■□□□□ 0.42
CTCFP49711 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 RCC2P8-201ENST00000502779 1035 ntBASIC17.68■□□□□ 0.42
CTCFP49711 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
CTCFP49711 IGHEP1-201ENST00000521393 651 ntBASIC17.68■□□□□ 0.42
CTCFP49711 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 STUB1-204ENST00000564370 875 ntTSL 2 BASIC17.68■□□□□ 0.42
CTCFP49711 PCBP2-OT1-201ENST00000634357 590 ntBASIC17.68■□□□□ 0.42
CTCFP49711 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.68■□□□□ 0.42
CTCFP49711 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.68■□□□□ 0.42
CTCFP49711 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CTCFP49711 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTCFP49711 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTCFP49711 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
CTCFP49711 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTCFP49711 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.67■□□□□ 0.42
CTCFP49711 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CTCFP49711 RPL8P2-201ENST00000430538 502 ntBASIC17.67■□□□□ 0.42
CTCFP49711 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.67■□□□□ 0.42
CTCFP49711 AL391280.1-201ENST00000506969 1062 ntBASIC17.67■□□□□ 0.42
CTCFP49711 AL132994.2-201ENST00000603120 687 ntBASIC17.67■□□□□ 0.42
CTCFP49711 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.67■□□□□ 0.42
CTCFP49711 AC006158.1-201ENST00000610661 249 ntBASIC17.67■□□□□ 0.42
CTCFP49711 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTCFP49711 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CTCFP49711 AC092850.2-201ENST00000623821 2697 ntBASIC17.67■□□□□ 0.42
CTCFP49711 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms