Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 AC016694.1-201ENST00000434179 700 ntBASIC14.63□□□□□ -0.07
RORAP35398 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.63□□□□□ -0.07
RORAP35398 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.63□□□□□ -0.07
RORAP35398 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 KRT90P-201ENST00000549264 1064 ntBASIC14.63□□□□□ -0.07
RORAP35398 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.63□□□□□ -0.07
RORAP35398 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.63□□□□□ -0.07
RORAP35398 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.63□□□□□ -0.07
RORAP35398 AC025181.2-201ENST00000606994 802 ntBASIC14.63□□□□□ -0.07
RORAP35398 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
RORAP35398 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
RORAP35398 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
RORAP35398 CICP13-201ENST00000422015 2789 ntBASIC14.62□□□□□ -0.07
RORAP35398 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
RORAP35398 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
RORAP35398 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.62□□□□□ -0.07
RORAP35398 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.62□□□□□ -0.07
RORAP35398 CSF2RBP1-201ENST00000447905 391 ntBASIC14.62□□□□□ -0.07
RORAP35398 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.62□□□□□ -0.07
RORAP35398 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
RORAP35398 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.62□□□□□ -0.07
RORAP35398 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.62□□□□□ -0.07
RORAP35398 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.62□□□□□ -0.07
RORAP35398 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.62□□□□□ -0.07
RORAP35398 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 AL583810.1-201ENST00000553344 1045 ntBASIC14.62□□□□□ -0.07
RORAP35398 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 AC244669.2-201ENST00000612320 853 ntBASIC14.62□□□□□ -0.07
RORAP35398 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
RORAP35398 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RORAP35398 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.61□□□□□ -0.07
RORAP35398 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
RORAP35398 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RORAP35398 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
RORAP35398 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms