Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.52■□□□□ 0.4
SMARCA1P28370 MESTP3-201ENST00000503460 968 ntBASIC17.52■□□□□ 0.4
SMARCA1P28370 AC104989.1-201ENST00000519711 778 ntBASIC17.52■□□□□ 0.4
SMARCA1P28370 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.52■□□□□ 0.4
SMARCA1P28370 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.52■□□□□ 0.4
SMARCA1P28370 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.52■□□□□ 0.4
SMARCA1P28370 MIR6775-201ENST00000617557 69 ntBASIC17.52■□□□□ 0.4
SMARCA1P28370 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.52■□□□□ 0.39
SMARCA1P28370 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SMARCA1P28370 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMARCA1P28370 AGAP7P-201ENST00000582299 2062 ntBASIC17.52■□□□□ 0.39
SMARCA1P28370 AGAP14-201ENST00000624701 2060 ntBASIC17.52■□□□□ 0.39
SMARCA1P28370 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMARCA1P28370 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMARCA1P28370 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMARCA1P28370 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SMARCA1P28370 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.52■□□□□ 0.39
SMARCA1P28370 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
SMARCA1P28370 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SMARCA1P28370 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.52■□□□□ 0.39
SMARCA1P28370 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.52■□□□□ 0.39
SMARCA1P28370 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
SMARCA1P28370 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SMARCA1P28370 ACE3P-201ENST00000423435 1973 ntBASIC17.51■□□□□ 0.39
SMARCA1P28370 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 ANKRD19P-201ENST00000338192 862 ntBASIC17.51■□□□□ 0.39
SMARCA1P28370 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.51■□□□□ 0.39
SMARCA1P28370 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.51■□□□□ 0.39
SMARCA1P28370 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.51■□□□□ 0.39
SMARCA1P28370 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.51■□□□□ 0.39
SMARCA1P28370 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 AC119751.2-201ENST00000504529 210 ntBASIC17.51■□□□□ 0.39
SMARCA1P28370 IGHV3-71-201ENST00000523324 359 ntBASIC17.51■□□□□ 0.39
SMARCA1P28370 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.51■□□□□ 0.39
SMARCA1P28370 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.51■□□□□ 0.39
SMARCA1P28370 MIR6805-201ENST00000615055 62 ntBASIC17.51■□□□□ 0.39
SMARCA1P28370 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SMARCA1P28370 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.51■□□□□ 0.39
SMARCA1P28370 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
SMARCA1P28370 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMARCA1P28370 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SMARCA1P28370 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 TPM3P8-201ENST00000330554 643 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 FAM197Y7-201ENST00000432892 766 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 ATP5G2P4-201ENST00000442175 420 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 CTBP2P5-201ENST00000454986 1264 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 SNX29P1-201ENST00000548357 1007 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 AC006058.4-201ENST00000624016 1670 ntBASIC17.5■□□□□ 0.39
SMARCA1P28370 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.5■□□□□ 0.39
SMARCA1P28370 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.5■□□□□ 0.39
SMARCA1P28370 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SMARCA1P28370 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.5■□□□□ 0.39
SMARCA1P28370 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SMARCA1P28370 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms