Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
COL8A1P27658 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 KLF2P2-201ENST00000416807 1039 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 AC097065.1-201ENST00000425737 517 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 FAM8A4P-201ENST00000435433 1213 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
COL8A1P27658 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CTBP2P4-201ENST00000513884 920 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 RTN3P1-201ENST00000536295 711 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 AC103691.2-201ENST00000618824 433 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 AP001002.3-201ENST00000623482 206 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 AC100757.4-201ENST00000626934 759 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 CASP16P-204ENST00000635032 809 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.42□□□□□ -0.26
COL8A1P27658 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.42□□□□□ -0.26
COL8A1P27658 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.42□□□□□ -0.26
COL8A1P27658 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 AC105020.1-201ENST00000435356 2205 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.41□□□□□ -0.26
COL8A1P27658 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 AC067930.6-201ENST00000623257 4947 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 AC078991.1-201ENST00000437297 610 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 AC104073.2-201ENST00000453737 312 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.41□□□□□ -0.26
COL8A1P27658 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.41□□□□□ -0.26
COL8A1P27658 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC13.41□□□□□ -0.26
COL8A1P27658 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC13.41□□□□□ -0.26
COL8A1P27658 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.41□□□□□ -0.26
COL8A1P27658 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL8A1P27658 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.41□□□□□ -0.26
COL8A1P27658 AL353770.1-201ENST00000614915 403 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 AL805961.1-203ENST00000641078 1258 ntBASIC13.41□□□□□ -0.26
COL8A1P27658 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.41□□□□□ -0.26
COL8A1P27658 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL8A1P27658 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.4□□□□□ -0.26
COL8A1P27658 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL8A1P27658 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
COL8A1P27658 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
COL8A1P27658 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
COL8A1P27658 PCDH8P1-201ENST00000428983 2773 ntBASIC13.4□□□□□ -0.26
COL8A1P27658 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL8A1P27658 AC134407.2-201ENST00000625089 1978 ntBASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms