Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HMGB1P09429 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 KC6-207ENST00000600644 2311 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HMGB1P09429 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 AC087499.6-201ENST00000411576 835 ntBASIC18.13■□□□□ 0.49
HMGB1P09429 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 AC134915.1-201ENST00000426461 574 ntBASIC18.13■□□□□ 0.49
HMGB1P09429 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.13■□□□□ 0.49
HMGB1P09429 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.13■□□□□ 0.49
HMGB1P09429 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 INTS4P2-202ENST00000614726 2019 ntBASIC18.13■□□□□ 0.49
HMGB1P09429 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGB1P09429 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGB1P09429 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGB1P09429 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.13■□□□□ 0.49
HMGB1P09429 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 AC023824.1-201ENST00000562945 2975 ntBASIC18.12■□□□□ 0.49
HMGB1P09429 AL122018.1-201ENST00000446607 2310 ntBASIC18.12■□□□□ 0.49
HMGB1P09429 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.12■□□□□ 0.49
HMGB1P09429 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HMGB1P09429 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGB1P09429 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGB1P09429 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGB1P09429 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CICP23-201ENST00000605013 2741 ntBASIC18.11■□□□□ 0.49
HMGB1P09429 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms