Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 AC023024.2-201ENST00000623561 1993 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.86□□□□□ -0.03
HOXC4P09017 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.86□□□□□ -0.03
HOXC4P09017 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 AC004945.1-201ENST00000416738 983 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 MTX1P1-201ENST00000440904 838 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 RPSAP36-202ENST00000494591 1261 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 FAM8A2P-201ENST00000528813 1142 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 AP006547.1-201ENST00000563435 692 ntBASIC14.86□□□□□ -0.03
HOXC4P09017 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXC4P09017 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
HOXC4P09017 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXC4P09017 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXC4P09017 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXC4P09017 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HOXC4P09017 TLE1P1-201ENST00000422965 589 ntBASIC14.85□□□□□ -0.03
HOXC4P09017 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC4P09017 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXC4P09017 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.85□□□□□ -0.03
HOXC4P09017 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.85□□□□□ -0.03
HOXC4P09017 AC138696.2-201ENST00000607376 223 ntBASIC14.85□□□□□ -0.03
HOXC4P09017 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HOXC4P09017 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HOXC4P09017 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXC4P09017 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
HOXC4P09017 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXC4P09017 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 AC020907.1-201ENST00000616460 1350 ntBASIC14.85□□□□□ -0.03
HOXC4P09017 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXC4P09017 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms