Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 REXO1L4P-201ENST00000605109 1937 ntBASIC15.47■□□□□ 0.07
TRIM49D1C9J1S8 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC012508.2-201ENST00000567613 1472 ntBASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC004832.2-201ENST00000426397 482 ntBASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 MTND6P24-201ENST00000440466 518 ntBASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 SLED1-202ENST00000512051 380 ntBASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC105339.1-204ENST00000636249 355 ntBASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRIM49D1C9J1S8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
TRIM49D1C9J1S8 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 AC113367.3-201ENST00000508316 1912 ntBASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ST20-AS1-201ENST00000560255 4223 ntBASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 KRT18P64-201ENST00000434946 1219 ntBASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 AC005840.4-201ENST00000541242 2494 ntBASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
TRIM49D1C9J1S8 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms