Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 WASH3P-207ENST00000560956 1394 ntBASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 AC067930.6-201ENST00000623257 4947 ntBASIC14.58□□□□□ -0.08
ATG4BQ9Y4P1 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 REXO1L4P-201ENST00000605109 1937 ntBASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC087499.6-201ENST00000411576 835 ntBASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC107373.2-201ENST00000607735 490 ntBASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 LINC00528-201ENST00000600723 2160 ntBASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ATG4BQ9Y4P1 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC126755.1-201ENST00000525846 6405 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 MYCLP2-201ENST00000449268 967 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 RPL13AP25-201ENST00000484130 612 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC092552.1-201ENST00000547243 906 ntBASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.56□□□□□ -0.08
ATG4BQ9Y4P1 SAMD11P1-201ENST00000571429 661 ntBASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms