Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CNN2P8-201ENST00000421872 913 ntBASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 RN7SL560P-201ENST00000577943 264 ntBASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 AC073347.1-201ENST00000421633 2643 ntBASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC025279.2-201ENST00000569730 653 ntBASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC103810.3-201ENST00000583567 96 ntBASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC243960.2-201ENST00000600996 747 ntBASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 AC011477.6-201ENST00000604980 1927 ntBASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.41■□□□□ 0.06
TM9SF3Q9HD45 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AC023310.1-201ENST00000554836 735 ntBASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AC091271.1-201ENST00000611877 1162 ntBASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.4■□□□□ 0.06
TM9SF3Q9HD45 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms