Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 KRT17P7-201ENST00000451704 1104 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AC107373.2-201ENST00000607735 490 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 CU634019.7-201ENST00000624153 1185 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AL035252.4-201ENST00000624174 288 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 FP236241.2-201ENST00000624906 1185 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AL645728.2-202ENST00000641679 227 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 AC087481.3-201ENST00000602886 1894 ntBASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 AL512384.1-201ENST00000406683 331 ntBASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 RN7SL837P-201ENST00000463010 287 ntBASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 AC144831.1-201ENST00000573312 2656 ntBASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM39Q9HCM9 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 MIR600HG-201ENST00000449175 5984 ntBASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM39Q9HCM9 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms