Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC074338.1-201ENST00000416825 156 ntBASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 SLED1-202ENST00000512051 380 ntBASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC092552.1-201ENST00000547243 906 ntBASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLIP3Q96DZ5 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 U91328.1-201ENST00000437528 223 ntBASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ATP5G2P4-201ENST00000442175 420 ntBASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AL359881.2-201ENST00000602973 570 ntBASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AL359258.3-201ENST00000622910 2331 ntBASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.97□□□□□ -0.01
CLIP3Q96DZ5 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 FAM45BP-202ENST00000592932 1624 ntBASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.96□□□□□ -0.01
CLIP3Q96DZ5 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms