Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AL360270.3-201ENST00000609118 1348 ntBASIC20.51■□□□□ 0.87
NPHP3Q7Z494 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 OR6D1P-202ENST00000641007 5290 ntBASIC20.51■□□□□ 0.87
NPHP3Q7Z494 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AL592076.1-201ENST00000424448 303 ntBASIC20.51■□□□□ 0.87
NPHP3Q7Z494 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 NAT9-220ENST00000582870 896 ntTSL 5 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AC127024.7-201ENST00000625101 200 ntBASIC20.51■□□□□ 0.87
NPHP3Q7Z494 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPHP3Q7Z494 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 AC020910.5-201ENST00000623668 1865 ntBASIC20.5■□□□□ 0.87
NPHP3Q7Z494 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 AC138932.1-201ENST00000534164 6830 ntBASIC20.5■□□□□ 0.87
NPHP3Q7Z494 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 RN7SKP230-201ENST00000365642 335 ntBASIC20.5■□□□□ 0.87
NPHP3Q7Z494 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 PIN4P1-201ENST00000451079 396 ntBASIC20.5■□□□□ 0.87
NPHP3Q7Z494 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.5■□□□□ 0.87
NPHP3Q7Z494 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AL157414.3-201ENST00000624276 1954 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AC136759.1-202ENST00000530858 2194 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 FRMPD2B-201ENST00000431305 1347 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 MTHFR-217ENST00000641820 1569 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 SOD2-202ENST00000367054 815 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AC012362.1-201ENST00000434906 739 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC20.49■□□□□ 0.87
NPHP3Q7Z494 MIR6720-201ENST00000611664 98 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 MIR6858-201ENST00000620733 67 ntBASIC20.49■□□□□ 0.87
NPHP3Q7Z494 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms