Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.26□□□□□ -0.13
RNF4P78317 AC093433.1-201ENST00000458048 571 ntBASIC14.26□□□□□ -0.13
RNF4P78317 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.26□□□□□ -0.13
RNF4P78317 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.26□□□□□ -0.13
RNF4P78317 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 SAMD11P1-201ENST00000571429 661 ntBASIC14.26□□□□□ -0.13
RNF4P78317 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 AC007787.1-201ENST00000588095 1583 ntBASIC14.26□□□□□ -0.13
RNF4P78317 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 C18orf15-201ENST00000623680 2534 ntBASIC14.25□□□□□ -0.13
RNF4P78317 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 AC112693.3-201ENST00000624819 1983 ntBASIC14.25□□□□□ -0.13
RNF4P78317 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.25□□□□□ -0.13
RNF4P78317 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 AC093525.8-201ENST00000624099 1342 ntBASIC14.25□□□□□ -0.13
RNF4P78317 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 BAATP1-201ENST00000412284 1225 ntBASIC14.25□□□□□ -0.13
RNF4P78317 NUS1P3-201ENST00000423502 862 ntBASIC14.25□□□□□ -0.13
RNF4P78317 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.25□□□□□ -0.13
RNF4P78317 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.25□□□□□ -0.13
RNF4P78317 AC068587.3-201ENST00000526613 355 ntBASIC14.25□□□□□ -0.13
RNF4P78317 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.25□□□□□ -0.13
RNF4P78317 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.25□□□□□ -0.13
RNF4P78317 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.25□□□□□ -0.13
RNF4P78317 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RNF4P78317 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms