Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH13P55290 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CDH13P55290 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH13P55290 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH13P55290 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CDH13P55290 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CDH13P55290 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CDH13P55290 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.12■□□□□ 0.01
CDH13P55290 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.12■□□□□ 0.01
CDH13P55290 AL365209.1-201ENST00000624418 6473 ntBASIC15.11■□□□□ 0.01
CDH13P55290 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 AC117489.1-201ENST00000625169 3217 ntBASIC15.11■□□□□ 0.01
CDH13P55290 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.11■□□□□ 0.01
CDH13P55290 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.11■□□□□ 0.01
CDH13P55290 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH13P55290 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH13P55290 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 SERBP1P3-201ENST00000459980 809 ntBASIC15.11■□□□□ 0.01
CDH13P55290 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 AL512361.1-201ENST00000554200 418 ntBASIC15.11■□□□□ 0.01
CDH13P55290 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH13P55290 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
CDH13P55290 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH13P55290 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 AL596442.2-201ENST00000610240 980 ntBASIC15.11■□□□□ 0.01
CDH13P55290 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 AC134684.3-201ENST00000641758 218 ntBASIC15.11■□□□□ 0.01
CDH13P55290 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.11■□□□□ 0.01
CDH13P55290 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.11■□□□□ 0.01
CDH13P55290 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CDH13P55290 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CDH13P55290 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
CDH13P55290 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 OR2I1P-209ENST00000641730 5365 ntBASIC15.1■□□□□ 0.01
CDH13P55290 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CDH13P55290 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CDH13P55290 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.1■□□□□ 0.01
CDH13P55290 GHSR-202ENST00000427970 912 ntBASIC15.1■□□□□ 0.01
CDH13P55290 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 AC109322.1-201ENST00000524499 1264 ntBASIC15.1■□□□□ 0.01
CDH13P55290 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CDH13P55290 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.1■□□□□ 0.01
CDH13P55290 SNHG9-202ENST00000564014 471 ntBASIC15.1■□□□□ 0.01
CDH13P55290 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 SPDYE12P-201ENST00000618416 771 ntBASIC15.1■□□□□ 0.01
CDH13P55290 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.1■□□□□ 0.01
CDH13P55290 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.1■□□□□ 0.01
CDH13P55290 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms