Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDX1P52945 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 ACKR1-201ENST00000368121 1240 ntBASIC14.96□□□□□ -0.01
PDX1P52945 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 MIR1247-201ENST00000408206 136 ntBASIC14.96□□□□□ -0.01
PDX1P52945 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.96□□□□□ -0.01
PDX1P52945 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.96□□□□□ -0.01
PDX1P52945 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 C2orf69P2-201ENST00000562032 1123 ntBASIC14.96□□□□□ -0.01
PDX1P52945 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.96□□□□□ -0.01
PDX1P52945 AC025279.2-201ENST00000569730 653 ntBASIC14.96□□□□□ -0.01
PDX1P52945 RN7SL560P-201ENST00000577943 264 ntBASIC14.96□□□□□ -0.01
PDX1P52945 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDX1P52945 AC243960.2-201ENST00000600996 747 ntBASIC14.96□□□□□ -0.01
PDX1P52945 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.96□□□□□ -0.01
PDX1P52945 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.96□□□□□ -0.01
PDX1P52945 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PDX1P52945 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDX1P52945 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PDX1P52945 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PDX1P52945 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.96□□□□□ -0.02
PDX1P52945 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.96□□□□□ -0.02
PDX1P52945 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PDX1P52945 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.96□□□□□ -0.02
PDX1P52945 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PDX1P52945 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
PDX1P52945 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PDX1P52945 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PDX1P52945 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.95□□□□□ -0.02
PDX1P52945 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.95□□□□□ -0.02
PDX1P52945 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 PFN1P12-201ENST00000455938 534 ntBASIC14.95□□□□□ -0.02
PDX1P52945 GAPDHP40-201ENST00000505218 1006 ntBASIC14.95□□□□□ -0.02
PDX1P52945 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.95□□□□□ -0.02
PDX1P52945 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 MIR3615-201ENST00000581999 87 ntBASIC14.95□□□□□ -0.02
PDX1P52945 AC103810.3-201ENST00000583567 96 ntBASIC14.95□□□□□ -0.02
PDX1P52945 AC093813.1-201ENST00000605066 256 ntBASIC14.95□□□□□ -0.02
PDX1P52945 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.95□□□□□ -0.02
PDX1P52945 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 AC011477.6-201ENST00000604980 1927 ntBASIC14.95□□□□□ -0.02
PDX1P52945 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.95□□□□□ -0.02
PDX1P52945 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.95□□□□□ -0.02
PDX1P52945 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PDX1P52945 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.94□□□□□ -0.02
PDX1P52945 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
PDX1P52945 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
PDX1P52945 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
PDX1P52945 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDX1P52945 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.94□□□□□ -0.02
PDX1P52945 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.94□□□□□ -0.02
PDX1P52945 C2orf27AP3-201ENST00000434123 579 ntBASIC14.94□□□□□ -0.02
PDX1P52945 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 AP001582.1-201ENST00000525856 295 ntBASIC14.94□□□□□ -0.02
PDX1P52945 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.94□□□□□ -0.02
PDX1P52945 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms