Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LIG3P49916 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 AC055876.3-201ENST00000431496 288 ntBASIC16.3■□□□□ 0.2
LIG3P49916 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 AC069120.2-201ENST00000524091 540 ntBASIC16.3■□□□□ 0.2
LIG3P49916 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 AC024267.1-201ENST00000582320 895 ntBASIC16.3■□□□□ 0.2
LIG3P49916 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 AC138649.4-201ENST00000612222 287 ntBASIC16.3■□□□□ 0.2
LIG3P49916 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 U82695.1-201ENST00000635752 1889 ntBASIC16.3■□□□□ 0.2
LIG3P49916 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.3■□□□□ 0.2
LIG3P49916 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC16.3■□□□□ 0.2
LIG3P49916 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LIG3P49916 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LIG3P49916 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG3P49916 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIG3P49916 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG3P49916 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 POU5F1P6-201ENST00000466990 990 ntBASIC16.29■□□□□ 0.2
LIG3P49916 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.29■□□□□ 0.2
LIG3P49916 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.29■□□□□ 0.2
LIG3P49916 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.29■□□□□ 0.2
LIG3P49916 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 REXO1L2P-201ENST00000425429 2069 ntBASIC16.29■□□□□ 0.2
LIG3P49916 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG3P49916 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIG3P49916 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG3P49916 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
LIG3P49916 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG3P49916 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIG3P49916 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.28■□□□□ 0.2
LIG3P49916 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG3P49916 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms