Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC18.1■□□□□ 0.49
BRCA1P38398 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.1■□□□□ 0.49
BRCA1P38398 PEBP1P2-201ENST00000603980 558 ntBASIC18.1■□□□□ 0.49
BRCA1P38398 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
BRCA1P38398 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 AL672207.1-201ENST00000328462 1570 ntBASIC18.1■□□□□ 0.49
BRCA1P38398 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.1■□□□□ 0.49
BRCA1P38398 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BRCA1P38398 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC18.09■□□□□ 0.49
BRCA1P38398 AC073869.2-201ENST00000417338 1026 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 AC131206.1-201ENST00000538078 1211 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BRCA1P38398 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BRCA1P38398 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 AC004522.1-201ENST00000419978 654 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 AC026470.1-201ENST00000478038 846 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 FAM86B3P-203ENST00000523992 854 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.09■□□□□ 0.49
BRCA1P38398 AL139339.2-201ENST00000608063 657 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 PTPN20CP-201ENST00000614090 920 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 AC023090.2-201ENST00000625182 2110 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 AC025183.3-201ENST00000623526 1482 ntBASIC18.09■□□□□ 0.49
BRCA1P38398 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
BRCA1P38398 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC18.09■□□□□ 0.49
BRCA1P38398 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.09■□□□□ 0.49
BRCA1P38398 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
BRCA1P38398 AL357373.1-201ENST00000394974 322 ntBASIC18.08■□□□□ 0.49
BRCA1P38398 KRT18P46-201ENST00000435568 1279 ntBASIC18.08■□□□□ 0.49
BRCA1P38398 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.08■□□□□ 0.49
BRCA1P38398 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.08■□□□□ 0.49
BRCA1P38398 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
BRCA1P38398 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.08■□□□□ 0.49
BRCA1P38398 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC18.08■□□□□ 0.49
BRCA1P38398 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
BRCA1P38398 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
BRCA1P38398 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.08■□□□□ 0.49
BRCA1P38398 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.08■□□□□ 0.48
BRCA1P38398 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 REXO1L2P-201ENST00000425429 2069 ntBASIC18.08■□□□□ 0.48
BRCA1P38398 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
BRCA1P38398 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.08■□□□□ 0.48
BRCA1P38398 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
BRCA1P38398 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.08■□□□□ 0.48
BRCA1P38398 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BRCA1P38398 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC18.07■□□□□ 0.48
BRCA1P38398 PPIA-208ENST00000489459 907 ntTSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.07■□□□□ 0.48
BRCA1P38398 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 AC140113.1-201ENST00000603467 169 ntBASIC18.07■□□□□ 0.48
BRCA1P38398 PPIA-210ENST00000620047 827 ntTSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 AL596087.1-201ENST00000400979 1969 ntBASIC18.07■□□□□ 0.48
BRCA1P38398 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms