Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 AC099336.1-201ENST00000417053 1171 ntBASIC14.65□□□□□ -0.06
RORAP35398 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 FO681548.1-201ENST00000455617 1132 ntBASIC14.65□□□□□ -0.06
RORAP35398 AP001582.1-201ENST00000525856 295 ntBASIC14.65□□□□□ -0.06
RORAP35398 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.65□□□□□ -0.06
RORAP35398 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
RORAP35398 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
RORAP35398 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
RORAP35398 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.65□□□□□ -0.06
RORAP35398 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
RORAP35398 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
RORAP35398 AL138799.1-201ENST00000448213 1675 ntBASIC14.65□□□□□ -0.06
RORAP35398 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.64□□□□□ -0.07
RORAP35398 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.64□□□□□ -0.07
RORAP35398 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.64□□□□□ -0.07
RORAP35398 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.64□□□□□ -0.07
RORAP35398 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.64□□□□□ -0.07
RORAP35398 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.64□□□□□ -0.07
RORAP35398 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.64□□□□□ -0.07
RORAP35398 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.64□□□□□ -0.07
RORAP35398 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.64□□□□□ -0.07
RORAP35398 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.64□□□□□ -0.07
RORAP35398 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.64□□□□□ -0.07
RORAP35398 AP005019.2-201ENST00000615104 511 ntBASIC14.64□□□□□ -0.07
RORAP35398 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.64□□□□□ -0.07
RORAP35398 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.64□□□□□ -0.07
RORAP35398 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RORAP35398 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RORAP35398 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
RORAP35398 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms