Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
MSX1P28360 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 AC098850.1-201ENST00000419919 790 ntBASIC14.13□□□□□ -0.15
MSX1P28360 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.13□□□□□ -0.15
MSX1P28360 AL442647.2-201ENST00000429864 857 ntBASIC14.13□□□□□ -0.15
MSX1P28360 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX1P28360 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.13□□□□□ -0.15
MSX1P28360 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
MSX1P28360 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 AP005482.1-201ENST00000563722 1273 ntBASIC14.13□□□□□ -0.15
MSX1P28360 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 BRI3BPP1-201ENST00000594224 787 ntBASIC14.13□□□□□ -0.15
MSX1P28360 CFTRP2-201ENST00000634304 199 ntBASIC14.13□□□□□ -0.15
MSX1P28360 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
MSX1P28360 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 AC136621.1-201ENST00000624017 2304 ntBASIC14.13□□□□□ -0.15
MSX1P28360 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-206ENST00000376090 689 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-209ENST00000376096 565 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-210ENST00000376099 610 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX1P28360 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-214ENST00000418507 726 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 AC134915.1-201ENST00000426461 574 ntBASIC14.12□□□□□ -0.15
MSX1P28360 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX1P28360 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX1P28360 AC092658.1-201ENST00000505836 891 ntBASIC14.12□□□□□ -0.15
MSX1P28360 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.12□□□□□ -0.15
MSX1P28360 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 AC015936.2-201ENST00000593177 259 ntBASIC14.12□□□□□ -0.15
MSX1P28360 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.12□□□□□ -0.15
MSX1P28360 AL049840.4-201ENST00000602422 811 ntBASIC14.12□□□□□ -0.15
MSX1P28360 AC093813.1-201ENST00000605066 256 ntBASIC14.12□□□□□ -0.15
MSX1P28360 WFDC1-204ENST00000613603 549 ntBASIC14.12□□□□□ -0.15
MSX1P28360 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
MSX1P28360 COX11-210ENST00000639671 696 ntBASIC14.12□□□□□ -0.15
MSX1P28360 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms