Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AL136317.3-201ENST00000618497 906 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 RAB34-224ENST00000636513 888 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 ZBED1P1-201ENST00000502364 1930 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 INTS4P1-203ENST00000641008 3683 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DMBP28068 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DMBP28068 AC117489.1-201ENST00000625169 3217 ntBASIC11.81□□□□□ -0.52
HLA-DMBP28068 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 RPS19-201ENST00000221975 500 ntTSL 3 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SLBP-205ENST00000488267 987 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AC011467.4-201ENST00000594891 528 ntBASIC11.8□□□□□ -0.52
HLA-DMBP28068 MIR6080-201ENST00000617359 66 ntBASIC11.8□□□□□ -0.52
HLA-DMBP28068 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DMBP28068 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DMBP28068 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DMBP28068 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DMBP28068 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms