Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 INTS4P2-202ENST00000614726 2019 ntBASIC14.03□□□□□ -0.16
HOXD4P09016 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 AC007686.3-201ENST00000619017 3487 ntBASIC14.03□□□□□ -0.16
HOXD4P09016 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
HOXD4P09016 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD4P09016 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD4P09016 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD4P09016 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD4P09016 AC097359.3-201ENST00000603982 1210 ntBASIC14.03□□□□□ -0.16
HOXD4P09016 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXD4P09016 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD4P09016 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD4P09016 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.02□□□□□ -0.16
HOXD4P09016 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
HOXD4P09016 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.02□□□□□ -0.16
HOXD4P09016 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
HOXD4P09016 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
HOXD4P09016 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
HOXD4P09016 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HOXD4P09016 AC007292.2-201ENST00000593524 1812 ntBASIC14.02□□□□□ -0.16
HOXD4P09016 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
HOXD4P09016 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.02□□□□□ -0.16
HOXD4P09016 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.02□□□□□ -0.16
HOXD4P09016 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD4P09016 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD4P09016 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD4P09016 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD4P09016 AC005229.1-201ENST00000392885 409 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HOXD4P09016 AL133267.1-201ENST00000398220 340 ntBASIC14.02□□□□□ -0.17
HOXD4P09016 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HOXD4P09016 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD4P09016 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD4P09016 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.02□□□□□ -0.17
HOXD4P09016 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms