Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 C2orf69P2-201ENST00000562032 1123 ntBASIC18.04■□□□□ 0.48
HLA-DOAP06340 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 KLK3-211ENST00000597483 810 ntTSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 PRKN-211ENST00000615065 261 ntTSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC099398.1-201ENST00000567919 2776 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC092850.2-201ENST00000623821 2697 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 POM121L8P-201ENST00000417732 1281 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 HLA-K-203ENST00000430151 1046 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC007969.1-201ENST00000433675 447 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC006033.1-201ENST00000440505 426 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 POM121L9P-203ENST00000441984 1285 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 COX5BP1-201ENST00000507622 393 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 AL118558.3-201ENST00000607414 1079 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 AC090616.6-203ENST00000579186 1945 ntBASIC18.03■□□□□ 0.48
HLA-DOAP06340 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DOAP06340 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DOAP06340 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 GHSR-202ENST00000427970 912 ntBASIC18.02■□□□□ 0.48
HLA-DOAP06340 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 AC103810.3-201ENST00000583567 96 ntBASIC18.02■□□□□ 0.48
HLA-DOAP06340 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 AL022328.3-201ENST00000607943 679 ntBASIC18.02■□□□□ 0.48
HLA-DOAP06340 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DOAP06340 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.02■□□□□ 0.48
HLA-DOAP06340 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DOAP06340 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DOAP06340 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DOAP06340 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
HLA-DOAP06340 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms