Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 MIR4754-201ENST00000582477 89 ntBASIC18.38■□□□□ 0.53
COL4A1P02462 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.38■□□□□ 0.53
COL4A1P02462 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A1P02462 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
COL4A1P02462 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 AC011742.3-201ENST00000439053 820 ntBASIC18.38■□□□□ 0.53
COL4A1P02462 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 SCARNA21-201ENST00000517026 139 ntBASIC18.38■□□□□ 0.53
COL4A1P02462 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL4A1P02462 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 RN7SL555P-201ENST00000584742 339 ntBASIC18.38■□□□□ 0.53
COL4A1P02462 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A1P02462 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A1P02462 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.38■□□□□ 0.53
COL4A1P02462 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.37■□□□□ 0.53
COL4A1P02462 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 AC131206.1-201ENST00000538078 1211 ntBASIC18.37■□□□□ 0.53
COL4A1P02462 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 AC007718.1-201ENST00000621078 280 ntBASIC18.37■□□□□ 0.53
COL4A1P02462 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A1P02462 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL4A1P02462 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A1P02462 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A1P02462 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A1P02462 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A1P02462 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
COL4A1P02462 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A1P02462 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A1P02462 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL4A1P02462 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 OR2K2-202ENST00000374428 1038 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 CICP12-201ENST00000455801 843 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 TUBB8P8-201ENST00000458717 1058 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 AC006122.1-201ENST00000493323 440 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 AC242376.1-201ENST00000559033 726 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 AC008805.1-201ENST00000590892 364 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.36■□□□□ 0.53
COL4A1P02462 AC100757.4-201ENST00000626934 759 ntBASIC18.36■□□□□ 0.53
COL4A1P02462 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
COL4A1P02462 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A1P02462 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
COL4A1P02462 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A1P02462 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A1P02462 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms