Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.3■□□□□ 0.52
MBD4O95243 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.3■□□□□ 0.52
MBD4O95243 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MBD4O95243 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
MBD4O95243 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.29■□□□□ 0.52
MBD4O95243 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 AC013268.4-201ENST00000637413 2228 ntBASIC18.29■□□□□ 0.52
MBD4O95243 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
MBD4O95243 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 FAM197Y7-201ENST00000432892 766 ntBASIC18.29■□□□□ 0.52
MBD4O95243 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 KRT223P-202ENST00000449164 1292 ntBASIC18.29■□□□□ 0.52
MBD4O95243 AL590640.2-201ENST00000457038 527 ntBASIC18.29■□□□□ 0.52
MBD4O95243 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 AP000812.2-201ENST00000538934 718 ntBASIC18.29■□□□□ 0.52
MBD4O95243 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.29■□□□□ 0.52
MBD4O95243 AC133552.6-201ENST00000613406 534 ntBASIC18.29■□□□□ 0.52
MBD4O95243 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.29■□□□□ 0.52
MBD4O95243 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MBD4O95243 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
MBD4O95243 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 AC012508.2-201ENST00000567613 1472 ntBASIC18.28■□□□□ 0.52
MBD4O95243 AP000845.1-201ENST00000581677 2131 ntBASIC18.28■□□□□ 0.52
MBD4O95243 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 AP005482.1-201ENST00000563722 1273 ntBASIC18.28■□□□□ 0.52
MBD4O95243 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.28■□□□□ 0.52
MBD4O95243 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MBD4O95243 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MBD4O95243 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.28■□□□□ 0.52
MBD4O95243 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms