Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC188H7C350 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC188H7C350 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 AC152010.1-201ENST00000415779 2006 ntBASIC16.04■□□□□ 0.16
CCDC188H7C350 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
CCDC188H7C350 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 ZNF259P1-201ENST00000407656 1365 ntBASIC16.04■□□□□ 0.16
CCDC188H7C350 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC188H7C350 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC188H7C350 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 AC069335.1-201ENST00000489972 472 ntBASIC16.04■□□□□ 0.16
CCDC188H7C350 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.04■□□□□ 0.16
CCDC188H7C350 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC188H7C350 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC188H7C350 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CCDC188H7C350 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC188H7C350 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC188H7C350 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 AC015656.1-201ENST00000624209 3578 ntBASIC16.03■□□□□ 0.16
CCDC188H7C350 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC188H7C350 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC188H7C350 ACTG1P14-201ENST00000446382 1122 ntBASIC16.03■□□□□ 0.16
CCDC188H7C350 KRT18P3-201ENST00000451602 1288 ntBASIC16.03■□□□□ 0.16
CCDC188H7C350 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC188H7C350 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.03■□□□□ 0.16
CCDC188H7C350 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.03■□□□□ 0.16
CCDC188H7C350 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC188H7C350 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC188H7C350 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC188H7C350 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CCDC188H7C350 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms