Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ZBED1P1-201ENST00000502364 1930 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 AP000845.1-201ENST00000581677 2131 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AC236430.1-201ENST00000402231 743 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 VDAC1P7-201ENST00000462417 847 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AC107373.2-201ENST00000607735 490 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AL662799.1-202ENST00000614205 422 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 AC008761.3-201ENST00000624803 892 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 DRD5P1-201ENST00000456605 1438 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 LINC00528-201ENST00000600723 2160 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16■□□□□ 0.15
AP4E1Q9UPM8 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AL136379.1-201ENST00000623471 2642 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC012508.2-201ENST00000567613 1472 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC007541.1-201ENST00000570282 1469 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SAMD11P1-201ENST00000571429 661 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC093726.1-201ENST00000608064 963 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 MIR8072-201ENST00000614241 80 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 AL359258.3-201ENST00000622910 2331 ntBASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP4E1Q9UPM8 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
AP4E1Q9UPM8 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
AP4E1Q9UPM8 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP4E1Q9UPM8 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms