Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TMEM14DP-201ENST00000422205 345 ntBASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 AC138035.3-201ENST00000622706 2791 ntBASIC18.42■□□□□ 0.54
CHMP4CQ96CF2 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 C18orf15-201ENST00000623680 2534 ntBASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHMP4CQ96CF2 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHMP4CQ96CF2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms