Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 SPDYE7P-202ENST00000420373 878 ntBASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 SLED1-202ENST00000512051 380 ntBASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 LINC00628-201ENST00000628516 1289 ntBASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 INTS4P1-203ENST00000641008 3683 ntBASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 MROH4P-201ENST00000431302 1578 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AL359258.3-201ENST00000622910 2331 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 RPL5P21-201ENST00000404620 815 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 RPL37AP1-201ENST00000412502 279 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 MIR6069-201ENST00000620069 79 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AF228730.6-201ENST00000641497 218 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC084121.3-201ENST00000641716 218 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC134684.3-201ENST00000641758 218 ntBASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.86□□□□□ -0.03
CLHC1Q8NHS4 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLHC1Q8NHS4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.85□□□□□ -0.03
CLHC1Q8NHS4 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLHC1Q8NHS4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CLHC1Q8NHS4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms