Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.79□□□□□ -0.2
H3F3AP84243 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.79□□□□□ -0.2
H3F3AP84243 AC120045.2-201ENST00000567334 178 ntBASIC13.79□□□□□ -0.2
H3F3AP84243 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.79□□□□□ -0.2
H3F3AP84243 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
H3F3AP84243 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.79□□□□□ -0.2
H3F3AP84243 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
H3F3AP84243 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
H3F3AP84243 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.78□□□□□ -0.2
H3F3AP84243 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.78□□□□□ -0.2
H3F3AP84243 AC004066.1-201ENST00000502488 802 ntBASIC13.78□□□□□ -0.2
H3F3AP84243 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.78□□□□□ -0.2
H3F3AP84243 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.78□□□□□ -0.2
H3F3AP84243 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.78□□□□□ -0.2
H3F3AP84243 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.78□□□□□ -0.2
H3F3AP84243 AL359711.2-201ENST00000563105 872 ntBASIC13.78□□□□□ -0.2
H3F3AP84243 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.78□□□□□ -0.2
H3F3AP84243 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 AC093525.8-201ENST00000624099 1342 ntBASIC13.78□□□□□ -0.2
H3F3AP84243 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
H3F3AP84243 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.78□□□□□ -0.2
H3F3AP84243 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.78□□□□□ -0.2
H3F3AP84243 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms