Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 RN7SL48P-201ENST00000579283 293 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.2■□□□□ 0.02
LIMK1P53667 RN7SL725P-201ENST00000606439 259 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 AC100757.4-201ENST00000626934 759 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 HLA-C-210ENST00000640219 976 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.2■□□□□ 0.02
LIMK1P53667 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.2■□□□□ 0.02
LIMK1P53667 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 AC013268.4-201ENST00000637413 2228 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC15.2■□□□□ 0.02
LIMK1P53667 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC15.2■□□□□ 0.02
LIMK1P53667 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 DBET-201ENST00000630918 3363 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 AC006058.4-201ENST00000624016 1670 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LIMK1P53667 AC044849.1-201ENST00000519737 1188 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.19■□□□□ 0.02
LIMK1P53667 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.19■□□□□ 0.02
LIMK1P53667 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LIMK1P53667 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.19■□□□□ 0.02
LIMK1P53667 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 AL023775.1-201ENST00000454907 1746 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 BNIP3P1-202ENST00000550043 1585 ntBASIC15.19■□□□□ 0.02
LIMK1P53667 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LIMK1P53667 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIMK1P53667 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.19■□□□□ 0.02
LIMK1P53667 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AL596087.1-201ENST00000400979 1969 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 TNRC18P2-201ENST00000417666 2714 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 AL354989.2-201ENST00000435838 1540 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LIMK1P53667 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LIMK1P53667 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 AC007274.2-201ENST00000421675 662 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.18■□□□□ 0.02
LIMK1P53667 MSRA-203ENST00000441698 788 ntTSL 2 BASIC15.18■□□□□ 0.02
LIMK1P53667 PHKG1P2-201ENST00000457537 863 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 RN7SL11P-201ENST00000471305 293 ntBASIC15.18■□□□□ 0.02
LIMK1P53667 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms