Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 AC087481.3-201ENST00000602886 1894 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
COL4A4P53420 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.09■□□□□ 0.17
COL4A4P53420 AL008718.2-201ENST00000609206 1313 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.09■□□□□ 0.17
COL4A4P53420 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.09■□□□□ 0.17
COL4A4P53420 HLA-J-204ENST00000495278 958 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
COL4A4P53420 AC005357.2-202ENST00000590507 1060 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 AL162426.1-201ENST00000624141 743 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 AL603764.1-201ENST00000636452 321 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.09■□□□□ 0.17
COL4A4P53420 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL4A4P53420 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 MROH4P-201ENST00000431302 1578 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 AC008894.3-201ENST00000624324 3103 ntBASIC16.09■□□□□ 0.17
COL4A4P53420 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL4A4P53420 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.09■□□□□ 0.17
COL4A4P53420 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
COL4A4P53420 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.08■□□□□ 0.17
COL4A4P53420 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.08■□□□□ 0.17
COL4A4P53420 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.08■□□□□ 0.17
COL4A4P53420 AC097065.1-201ENST00000425737 517 ntBASIC16.08■□□□□ 0.17
COL4A4P53420 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.08■□□□□ 0.17
COL4A4P53420 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL4A4P53420 RN7SL818P-201ENST00000485099 259 ntBASIC16.08■□□□□ 0.17
COL4A4P53420 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.08■□□□□ 0.17
COL4A4P53420 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL4A4P53420 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.08■□□□□ 0.17
COL4A4P53420 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL4A4P53420 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.08■□□□□ 0.17
COL4A4P53420 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.08■□□□□ 0.17
COL4A4P53420 AC087045.2-201ENST00000606279 1003 ntBASIC16.08■□□□□ 0.17
COL4A4P53420 RN7SL725P-201ENST00000606439 259 ntBASIC16.08■□□□□ 0.17
COL4A4P53420 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.08■□□□□ 0.17
COL4A4P53420 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.08■□□□□ 0.17
COL4A4P53420 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL4A4P53420 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COL4A4P53420 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.08■□□□□ 0.16
COL4A4P53420 AC104640.1-201ENST00000562617 2109 ntBASIC16.08■□□□□ 0.16
COL4A4P53420 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COL4A4P53420 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.08■□□□□ 0.16
COL4A4P53420 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
COL4A4P53420 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COL4A4P53420 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A4P53420 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.08■□□□□ 0.16
COL4A4P53420 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL4A4P53420 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.08■□□□□ 0.16
COL4A4P53420 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.08■□□□□ 0.16
COL4A4P53420 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.08■□□□□ 0.16
COL4A4P53420 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.08■□□□□ 0.16
COL4A4P53420 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.08■□□□□ 0.16
COL4A4P53420 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.08■□□□□ 0.16
COL4A4P53420 AC092171.5-201ENST00000608012 942 ntBASIC16.08■□□□□ 0.16
COL4A4P53420 AC007718.1-201ENST00000621078 280 ntBASIC16.08■□□□□ 0.16
COL4A4P53420 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL4A4P53420 AC004923.1-202ENST00000642106 209 ntBASIC16.08■□□□□ 0.16
COL4A4P53420 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.08■□□□□ 0.16
COL4A4P53420 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL4A4P53420 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 AL109954.1-202ENST00000564051 2148 ntBASIC16.07■□□□□ 0.16
COL4A4P53420 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL4A4P53420 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
COL4A4P53420 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.07■□□□□ 0.16
COL4A4P53420 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms