Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LHX1P48742 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.26■□□□□ 0.19
LHX1P48742 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LHX1P48742 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LHX1P48742 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LHX1P48742 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LHX1P48742 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 AL360270.3-201ENST00000609118 1348 ntBASIC16.25■□□□□ 0.19
LHX1P48742 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LHX1P48742 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.25■□□□□ 0.19
LHX1P48742 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
LHX1P48742 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.25■□□□□ 0.19
LHX1P48742 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 FO681548.1-201ENST00000455617 1132 ntBASIC16.25■□□□□ 0.19
LHX1P48742 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LHX1P48742 RN7SL48P-201ENST00000579283 293 ntBASIC16.25■□□□□ 0.19
LHX1P48742 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 RHOXF1P1-202ENST00000635473 501 ntBASIC16.25■□□□□ 0.19
LHX1P48742 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.25■□□□□ 0.19
LHX1P48742 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.25■□□□□ 0.19
LHX1P48742 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LHX1P48742 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.24■□□□□ 0.19
LHX1P48742 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 REXO1L4P-201ENST00000605109 1937 ntBASIC16.24■□□□□ 0.19
LHX1P48742 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
LHX1P48742 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.24■□□□□ 0.19
LHX1P48742 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.24■□□□□ 0.19
LHX1P48742 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.24■□□□□ 0.19
LHX1P48742 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 AC105917.1-201ENST00000506637 2539 ntBASIC16.24■□□□□ 0.19
LHX1P48742 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LHX1P48742 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LHX1P48742 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LHX1P48742 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms