Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 PDIA3P1-201ENST00000471856 1510 ntBASIC17.57■□□□□ 0.4
SMARCA1P28370 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SMARCA1P28370 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 AL137783.1-201ENST00000623494 1896 ntBASIC17.56■□□□□ 0.4
SMARCA1P28370 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 MIR1909-201ENST00000411312 80 ntBASIC17.56■□□□□ 0.4
SMARCA1P28370 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.56■□□□□ 0.4
SMARCA1P28370 CROCCP4-201ENST00000457096 498 ntBASIC17.56■□□□□ 0.4
SMARCA1P28370 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
SMARCA1P28370 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.56■□□□□ 0.4
SMARCA1P28370 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SMARCA1P28370 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.56■□□□□ 0.4
SMARCA1P28370 KRT90P-201ENST00000549264 1064 ntBASIC17.56■□□□□ 0.4
SMARCA1P28370 ENPP7P14-201ENST00000621765 1040 ntBASIC17.56■□□□□ 0.4
SMARCA1P28370 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMARCA1P28370 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SMARCA1P28370 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.56■□□□□ 0.4
SMARCA1P28370 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.55■□□□□ 0.4
SMARCA1P28370 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SMARCA1P28370 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 GK-202ENST00000378941 458 ntTSL 3 BASIC17.55■□□□□ 0.4
SMARCA1P28370 POM121L8P-201ENST00000417732 1281 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 AC245100.3-201ENST00000441281 285 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 AC234783.1-201ENST00000441761 496 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 POM121L9P-203ENST00000441984 1285 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.55■□□□□ 0.4
SMARCA1P28370 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.55■□□□□ 0.4
SMARCA1P28370 AP005482.1-201ENST00000563722 1273 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.55■□□□□ 0.4
SMARCA1P28370 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 AC055811.4-201ENST00000624039 1754 ntBASIC17.55■□□□□ 0.4
SMARCA1P28370 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SMARCA1P28370 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms