Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HMGA1P17096 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGA1P17096 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 AC079178.1-201ENST00000420915 656 ntBASIC15.82■□□□□ 0.12
HMGA1P17096 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGA1P17096 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.82■□□□□ 0.12
HMGA1P17096 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.82■□□□□ 0.12
HMGA1P17096 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 AC244157.2-201ENST00000616239 1006 ntBASIC15.82■□□□□ 0.12
HMGA1P17096 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 AC007950.2-201ENST00000615045 2347 ntBASIC15.82■□□□□ 0.12
HMGA1P17096 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGA1P17096 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.81■□□□□ 0.12
HMGA1P17096 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGA1P17096 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGA1P17096 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.81■□□□□ 0.12
HMGA1P17096 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGA1P17096 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 HIST2H2BB-201ENST00000449108 381 ntBASIC15.81■□□□□ 0.12
HMGA1P17096 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGA1P17096 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGA1P17096 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 AP001258.2-201ENST00000529891 490 ntBASIC15.81■□□□□ 0.12
HMGA1P17096 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGA1P17096 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGA1P17096 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.81■□□□□ 0.12
HMGA1P17096 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.81■□□□□ 0.12
HMGA1P17096 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HMGA1P17096 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGA1P17096 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 SSR4P1-203ENST00000599569 2260 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 AP000845.1-201ENST00000581677 2131 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 AP000593.2-201ENST00000542775 1433 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 FKBP4P6-201ENST00000457486 1332 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms