Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC006449.6-201ENST00000612330 2296 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
HOXD4P09016 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXD4P09016 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXD4P09016 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.05□□□□□ -0.16
HOXD4P09016 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
HOXD4P09016 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.05□□□□□ -0.16
HOXD4P09016 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 AC000095.1-201ENST00000603208 874 ntBASIC14.05□□□□□ -0.16
HOXD4P09016 AL022328.1-201ENST00000610050 478 ntBASIC14.05□□□□□ -0.16
HOXD4P09016 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXD4P09016 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXD4P09016 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
HOXD4P09016 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 AC007191.1-201ENST00000623179 2995 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 AC134407.2-201ENST00000625089 1978 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 CICP20-201ENST00000443330 2801 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXD4P09016 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD4P09016 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 AC104989.1-201ENST00000519711 778 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXD4P09016 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 SLC25A47P1-201ENST00000531577 414 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 PTP4A1P2-201ENST00000546033 454 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 HNRNPUP1-201ENST00000554987 333 ntBASIC14.04□□□□□ -0.16
HOXD4P09016 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD4P09016 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.04□□□□□ -0.16
HOXD4P09016 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD4P09016 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms