Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
VPS4BO75351 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.19■□□□□ 0.02
VPS4BO75351 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.19■□□□□ 0.02
VPS4BO75351 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.19■□□□□ 0.02
VPS4BO75351 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.19■□□□□ 0.02
VPS4BO75351 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.19■□□□□ 0.02
VPS4BO75351 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 AC232323.1-201ENST00000540724 2099 ntBASIC15.19■□□□□ 0.02
VPS4BO75351 REXO1L5P-201ENST00000622260 2098 ntBASIC15.19■□□□□ 0.02
VPS4BO75351 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VPS4BO75351 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS4BO75351 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
VPS4BO75351 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 MRPS18AP1-201ENST00000414458 589 ntBASIC15.18■□□□□ 0.02
VPS4BO75351 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS4BO75351 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS4BO75351 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.18■□□□□ 0.02
VPS4BO75351 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VPS4BO75351 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 AL365209.1-201ENST00000624418 6473 ntBASIC15.18■□□□□ 0.02
VPS4BO75351 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS4BO75351 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS4BO75351 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS4BO75351 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
VPS4BO75351 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms