Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CACNA1FO60840 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.02■□□□□ 0.64
CACNA1FO60840 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 AC013355.1-201ENST00000562625 723 ntBASIC19.02■□□□□ 0.64
CACNA1FO60840 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.02■□□□□ 0.64
CACNA1FO60840 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1FO60840 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 AC046158.3-201ENST00000624947 2558 ntBASIC19.02■□□□□ 0.64
CACNA1FO60840 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
CACNA1FO60840 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1FO60840 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 MIR1908-201ENST00000410394 80 ntBASIC19.02■□□□□ 0.64
CACNA1FO60840 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1FO60840 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.02■□□□□ 0.64
CACNA1FO60840 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CACNA1FO60840 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CACNA1FO60840 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.02■□□□□ 0.64
CACNA1FO60840 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC19.02■□□□□ 0.64
CACNA1FO60840 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CACNA1FO60840 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CACNA1FO60840 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
CACNA1FO60840 AJ011931.1-201ENST00000618749 2492 ntBASIC19.02■□□□□ 0.63
CACNA1FO60840 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CACNA1FO60840 AHCYP2-201ENST00000430630 1300 ntBASIC19.02■□□□□ 0.63
CACNA1FO60840 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC19.02■□□□□ 0.63
CACNA1FO60840 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CACNA1FO60840 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 SHC1P1-201ENST00000425230 1745 ntBASIC19.01■□□□□ 0.63
CACNA1FO60840 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CACNA1FO60840 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.01■□□□□ 0.63
CACNA1FO60840 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.01■□□□□ 0.63
CACNA1FO60840 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.01■□□□□ 0.63
CACNA1FO60840 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.01■□□□□ 0.63
CACNA1FO60840 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AIRN-201ENST00000601203 4374 ntBASIC19.01■□□□□ 0.63
CACNA1FO60840 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 AC006058.4-201ENST00000624016 1670 ntBASIC19.01■□□□□ 0.63
CACNA1FO60840 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.01■□□□□ 0.63
CACNA1FO60840 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.01■□□□□ 0.63
CACNA1FO60840 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC19.01■□□□□ 0.63
CACNA1FO60840 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CACNA1FO60840 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms