Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
SGCEO43556 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
SGCEO43556 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.74□□□□□ -0.21
SGCEO43556 MIR943-201ENST00000401286 94 ntBASIC13.74□□□□□ -0.21
SGCEO43556 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.74□□□□□ -0.21
SGCEO43556 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.74□□□□□ -0.21
SGCEO43556 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 AC010336.2-201ENST00000564226 506 ntBASIC13.74□□□□□ -0.21
SGCEO43556 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 AC026748.1-201ENST00000624349 3251 ntBASIC13.74□□□□□ -0.21
SGCEO43556 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.74□□□□□ -0.21
SGCEO43556 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
SGCEO43556 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.74□□□□□ -0.21
SGCEO43556 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SGCEO43556 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SGCEO43556 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
SGCEO43556 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 AC087499.5-201ENST00000452760 1342 ntBASIC13.73□□□□□ -0.21
SGCEO43556 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.73□□□□□ -0.21
SGCEO43556 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.73□□□□□ -0.21
SGCEO43556 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 AC092580.3-201ENST00000430932 139 ntBASIC13.73□□□□□ -0.21
SGCEO43556 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.73□□□□□ -0.21
SGCEO43556 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.73□□□□□ -0.21
SGCEO43556 AC097493.3-201ENST00000509725 367 ntBASIC13.73□□□□□ -0.21
SGCEO43556 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.73□□□□□ -0.21
SGCEO43556 SDHAP3-202ENST00000515467 728 ntBASIC13.73□□□□□ -0.21
SGCEO43556 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.73□□□□□ -0.21
SGCEO43556 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.73□□□□□ -0.21
SGCEO43556 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.73□□□□□ -0.21
SGCEO43556 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SGCEO43556 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 AC107918.4-201ENST00000641966 3141 ntBASIC13.73□□□□□ -0.21
SGCEO43556 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SGCEO43556 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SGCEO43556 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms