Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SLC28A1O00337 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.89□□□□□ -0.03
SLC28A1O00337 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.89□□□□□ -0.03
SLC28A1O00337 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 TOMM22P5-201ENST00000416399 439 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.89□□□□□ -0.03
SLC28A1O00337 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.89□□□□□ -0.03
SLC28A1O00337 SBF1P1-201ENST00000444527 5631 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SLC28A1O00337 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.89□□□□□ -0.03
SLC28A1O00337 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SLC28A1O00337 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SLC28A1O00337 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.89□□□□□ -0.03
SLC28A1O00337 AC138969.3-201ENST00000546612 1459 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 AC138932.2-201ENST00000548268 1459 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 AC126755.4-201ENST00000549796 1459 ntBASIC14.89□□□□□ -0.03
SLC28A1O00337 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.88□□□□□ -0.03
SLC28A1O00337 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SLC28A1O00337 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 AC067750.1-201ENST00000608826 6545 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
SLC28A1O00337 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 AP006288.1-201ENST00000446065 395 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 RN7SL618P-201ENST00000477850 296 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.88□□□□□ -0.03
SLC28A1O00337 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 SNHG9-202ENST00000564014 471 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
SLC28A1O00337 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 LINC01115-203ENST00000606068 577 ntBASIC14.88□□□□□ -0.03
SLC28A1O00337 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.88□□□□□ -0.03
SLC28A1O00337 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SLC28A1O00337 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SLC28A1O00337 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.88□□□□□ -0.03
SLC28A1O00337 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SLC28A1O00337 LINC00552-201ENST00000625151 2579 ntBASIC14.87□□□□□ -0.03
SLC28A1O00337 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SLC28A1O00337 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SLC28A1O00337 AL121723.1-201ENST00000445194 1519 ntBASIC14.87□□□□□ -0.03
SLC28A1O00337 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SLC28A1O00337 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms