Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AC007389.4-201ENST00000454674 793 ntBASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 VDAC1P7-201ENST00000462417 847 ntBASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A3BPQ9Y5P4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 KRT8P22-201ENST00000562317 1415 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 OR8S1-201ENST00000310194 1080 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 AL162726.2-201ENST00000438986 1017 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 AC124283.3-201ENST00000570869 594 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 AC010319.3-201ENST00000597028 470 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 AC126365.1-201ENST00000578585 1514 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 TNRC18P2-201ENST00000417666 2714 ntBASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
COL4A3BPQ9Y5P4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TMEM14DP-201ENST00000422205 345 ntBASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 AC120045.2-201ENST00000567334 178 ntBASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 RPSAP52-203ENST00000622976 1023 ntBASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 CU634019.7-201ENST00000624153 1185 ntBASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 FP236241.2-201ENST00000624906 1185 ntBASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A3BPQ9Y5P4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.23■□□□□ 0.35
COL4A3BPQ9Y5P4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A3BPQ9Y5P4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL4A3BPQ9Y5P4 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
COL4A3BPQ9Y5P4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms