Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 AC104457.1-201ENST00000401024 814 ntBASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 FAM207CP-201ENST00000443486 507 ntBASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 AL132655.2-201ENST00000596276 594 ntBASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
AP4E1Q9UPM8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 REXO1L4P-201ENST00000605109 1937 ntBASIC16.02■□□□□ 0.15
AP4E1Q9UPM8 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 DFFBP1-201ENST00000433250 979 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 GAPDHP40-201ENST00000505218 1006 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 RN7SL204P-201ENST00000582831 262 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 LINC02560-201ENST00000596379 459 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC004233.3-201ENST00000607794 1269 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 AC099568.2-201ENST00000609194 695 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
AP4E1Q9UPM8 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16■□□□□ 0.15
AP4E1Q9UPM8 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
AP4E1Q9UPM8 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms