Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 YRDCP1-201ENST00000621419 643 ntBASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC28.96■■■□□ 2.23
SHROOM4Q9ULL8 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC28.95■■■□□ 2.23
SHROOM4Q9ULL8 AL158070.2-201ENST00000623713 1621 ntBASIC28.95■■■□□ 2.23
SHROOM4Q9ULL8 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.23
SHROOM4Q9ULL8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
SHROOM4Q9ULL8 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM4Q9ULL8 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 TNRC18P3-201ENST00000441896 2691 ntBASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 NOC2LP1-201ENST00000450578 752 ntBASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 MARK2P5-201ENST00000507649 634 ntBASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 MIR3147-201ENST00000577811 66 ntBASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 OR6D1P-202ENST00000641007 5290 ntBASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC28.94■■■□□ 2.22
SHROOM4Q9ULL8 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 RGS5-214ENST00000429865 754 ntTSL 3 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 EIF3FP3-201ENST00000434851 1086 ntBASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 AC106794.1-201ENST00000506935 792 ntBASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC28.93■■■□□ 2.22
SHROOM4Q9ULL8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 ENPP7P14-201ENST00000621765 1040 ntBASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 AC007787.1-201ENST00000588095 1583 ntBASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC28.92■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms