Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 AC134684.3-201ENST00000641758 218 ntBASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC39Q9UFE4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AC018892.3-201ENST00000623986 2499 ntBASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 SPDYE7P-202ENST00000420373 878 ntBASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 EEF1DP4-201ENST00000446006 880 ntBASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AC004967.1-201ENST00000453589 447 ntBASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 BEND3P1-201ENST00000421591 1944 ntBASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC39Q9UFE4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 AC007967.4-201ENST00000614700 386 ntBASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 AP001059.3-201ENST00000619053 235 ntBASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC39Q9UFE4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms