Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 HNRNPA1P25-201ENST00000422644 937 ntBASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC092171.3-201ENST00000610122 2651 ntBASIC13.97□□□□□ -0.17
CHD8Q9HCK8 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC092580.1-201ENST00000433998 658 ntBASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CHD8Q9HCK8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 ZNF436-AS1-201ENST00000335648 2547 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AC098657.1-201ENST00000416270 1135 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AHCYP3-201ENST00000420053 1279 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 MAGEA7P-201ENST00000436482 942 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 MARK2P16-201ENST00000605714 1723 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 NQO2-204ENST00000380454 851 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AL451000.1-201ENST00000451300 1186 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 RNA5SP417-201ENST00000516459 108 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AC226150.1-201ENST00000544259 466 ntBASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CHD8Q9HCK8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CHD8Q9HCK8 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 AC060834.1-201ENST00000443027 2032 ntBASIC13.95□□□□□ -0.18
CHD8Q9HCK8 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 AL160191.2-201ENST00000603975 601 ntBASIC13.95□□□□□ -0.18
CHD8Q9HCK8 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.95□□□□□ -0.18
CHD8Q9HCK8 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms